Funded PhD Opportunity Rapid Diagnostics for Antimicrobial Resistant Pathogens

This opportunity is now closed.

Subject: Electrical and Electronic Engineering, Metallurgy and Materials

Summary

The (mis)use of antibiotics for more than 50 years has resulted in bacterial organisms becoming resistant to treatment – i.e. antimicrobial resistance (AMR).  Resistant organisms, such as MRSA and C. diff are commonly identified in healthcare facilities across the globe; annually 700,000 fatalities are directly attributed to drug resistant infections.  A recent report from The Review on Antimicrobial Resistance, chaired by Lord O'Neill, projects that drug-resistant infections could kill 10 million people annually across the world by 2050 incurring a global financial cost of $100 trillion (1).  Issues surrounding AMR are not limited to human medicine, with new approaches towards the management of animals and the environment also required – a One Health approach is being promoted. Standard techniques for the identification of pathogenic and AMR organisms are based upon the growth of patients’ samples on agar plates (phenotypic methods), which require 48 - 72 hours toidentify organisms such as MRSA, and several weeks for the pathogens causing Tuberculosis (2).  Advances in hardware and software have resulted in the development of a small number of rapid diagnostic tests which can provide results within hours of a sample being taken, however these tests do not have the sensitivity or speed of analysis to aid a medical practitioner (e.g. a GP or a vet) to identify the organisms causing a disease or to provide information on the resistance of organisms to antibiotics.  As such, antibiotics are often prescribed to a patient with a viral disease (e.g. the cold or flu) and worse than having no therapeutic effect, increase the development of resistant organisms with the patient (1).  Rapid genomic based approaches, such as the use of the whole genome sequencing, have shown significant promise in reducing the time required to detect resistant pathogens and therefore clinicians can administer more targeted medical therapy within hours.

This PhD project will develop rapid tests to classify pathogens and identify their sensitivity to a range of antimicrobial compounds, in a bid to provide rapid and accurate information to permit a medical practitioner to prescribe antibiotics in an informed, targeted and more appropriate way.  The project will involve the development of next-generation lateral flow devices, based on multiplexed nucleic acid detection, and star shaped nanoparticles for surface enhanced raman spectroscopy  (SERS).  This underpinning technology has wide application for sensitive and specific bacterial detection in water, food, human and veterinary medicine. The supervisory team at NIBEC have significant experience in microbiology, molecular biology, nanoparticle preparation & characterisation and the development of lateral-flow based point-of-care tests - from first principle experiments, rapid prototyping, computational analysis and app development through to patient trails.  Successful student/s will work along side researchers on a number of ongoing national and international research projects within NIBEC.

References:

(1) O’Neill (2015) Rapid Diagnostics: Stopping Unnecessary Use of Antibiotics.  Published online: http://amr-review.org/sites/default/files/Paper-Rapid-Diagnostics-Stopping-nnecessary-Prescription-Low-Res.pdf

(2) Wenzler et al (2016) Controversies in Antimicrobial Stewardship: Focus on New Rapid Diagnostic Technologies and Antimicrobials, Antibiotics, 5, 6 (doi: 10.3390/antibiotics5010006).

Essential Criteria

  • Upper Second Class Honours (2:1) Degree from a UK institution (or overseas award deemed equivalent via UK NARIC)

Funding

    Vice Chancellors Research Scholarships (VCRS)

    The scholarships will cover tuition fees and a maintenance award of £14,777 per annum for three years (subject to satisfactory academic performance). Applications are invited from UK, European Union and overseas students.

    DFE

    The scholarship will cover tuition fees at the Home rate and a maintenance allowance of £ 14,777 per annum for three years. EU applicants will only be eligible for the fees component of the studentship (no maintenance award is provided).  For Non EU nationals the candidate must be "settled" in the UK.

Other information

The Doctoral College at Ulster University

Launch of the Doctoral College

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Key Dates

Submission Deadline
Monday 19 February 2018
Interview Date
Mid March 2018

Contact Supervisor

Dr Patrick Dunlop

Other Supervisors

Apply online

Visit https://www.ulster.ac.uk/applyonline and quote reference number #238524 when applying for this PhD opportunity